PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009614561.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family RAV
Protein Properties Length: 362aa    MW: 41190.1 Da    PI: 9.3912
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009614561.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.95.2e-1359107155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s++kGV   + +grW A+I++      ++r++lg+f  ++eAaka++ a+++++g
  XP_009614561.1  59 SRFKGVVPQP-NGRWGAQIYEK-----HQRIWLGTFNDEDEAAKAYDVAAQRFRG 107
                     689***9788.8*********3.....5**********99************998 PP

2B394.95.3e-30190286195
                     EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     f+k+ tpsdv+k++rlv+pk++ae++   + ++ +++ l led +g++W+++++y+++s++yvltkGW++Fvk+++Lk+g +v F +++  +++l
  XP_009614561.1 190 FEKAVTPSDVGKLNRLVIPKQHAERYfplE-NNSKGMLLNLEDMNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGYIVSFGRSNGVDKQL 283
                     89*************************964.45689*************************************************9876666666 PP

                     EEE CS
              B3  93 vvk 95 
                     ++ 
  XP_009614561.1 284 YID 286
                     665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-1759115IPR016177DNA-binding domain
CDDcd000188.58E-2559114No hitNo description
PfamPF008471.6E-759107IPR001471AP2/ERF domain
SMARTSM003803.6E-2860121IPR001471AP2/ERF domain
PROSITE profilePS5103219.62560115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-1960115IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.109.3E-40184293IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.89E-31188288IPR015300DNA-binding pseudobarrel domain
CDDcd100176.56E-27189273No hitNo description
SMARTSM010198.1E-21190291IPR003340B3 DNA binding domain
PROSITE profilePS5086313.93190289IPR003340B3 DNA binding domain
PfamPF023621.8E-27190287IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MDGSCCIEQE STTSDSPSIA PTLISTRLSR MGSGTSSVII DAELNCGIEA ESIKKLPSSR  60
FKGVVPQPNG RWGAQIYEKH QRIWLGTFND EDEAAKAYDV AAQRFRGKDA VTNFKPLFDS  120
EKEEIEISFL NSRSKAEIVD MLRKHTYYDE LEHSKKVYSF NKNGKRTCCE DGVVTSFAVE  180
KLSKARELMF EKAVTPSDVG KLNRLVIPKQ HAERYFPLEN NSKGMLLNLE DMNGKVWRFR  240
YSYWNSSQSY VLTKGWSRFV KEKNLKAGYI VSFGRSNGVD KQLYIDWKAR ISSTTPVLDK  300
LQVQVQPVKM VRLFGVNICK VHDVNNIVVE NNLSSCNGGK RMREMESLAF ECRKKQRVID  360
AL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-5518729311120DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009614561.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
RefseqXP_016445426.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-136RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A1S3XZP80.0A0A1S3XZP8_TOBAC; AP2/ERF and B3 domain-containing transcription factor RAV1-like
STRINGXP_009614561.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29582453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-139related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]