PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009614205.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 324aa    MW: 37986.5 Da    PI: 8.6634
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009614205.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.18.6e-2255137286
        trihelix   2 WtkqevlaLiearremeerlr..rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W++qe+++ i +r e+e++++  +++  k+lWe v++km+erg++rs++qCk+kw+nl +ryk  + ++ ++      ++++fd+l+
  XP_009614205.1  55 WSNQETRDFIGIRGELEKEFSlaKRSNWKNLWEMVAAKMKERGYRRSAEQCKSKWKNLVNRYKGKESSDPDN----GGQFQFFDELH 137
                     ********************94345577************************************99999984....34588999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.78247113IPR017877Myb-like domain
PfamPF138378.4E-2254139No hitNo description
CDDcd122037.45E-2255120No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MFGGGDNENL GPFTQRLMFP NLPLHLLPGA SISTATATVA GDDEFPKRDE RVPPWSNQET  60
RDFIGIRGEL EKEFSLAKRS NWKNLWEMVA AKMKERGYRR SAEQCKSKWK NLVNRYKGKE  120
SSDPDNGGQF QFFDELHALF TTSTNNVHQL QLESEAGSQQ AKKRPRRTIR DQSSEDVSED  180
EEGYESDEVK LAKSKVAPKK NIEKEKRPRT KNAEKPSRQP SLGSTNNSGR TVENIQEMLK  240
DFFQQQLRIE MQWRETMEKC AREREVFEQE WRSSMEKLER DRMMIEQAWR EREEQRRMRE  300
ENRAEKRDAL LTTLLNKLIG ENHP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009614205.10.0PREDICTED: trihelix transcription factor GT-3b-like
RefseqXP_016467525.10.0PREDICTED: trihelix transcription factor GT-3b-like
TrEMBLA0A1S3ZSY90.0A0A1S3ZSY9_TOBAC; trihelix transcription factor GT-3b-like
STRINGXP_009614205.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101331923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.11e-33Trihelix family protein