PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009612458.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 774aa    MW: 88974.5 Da    PI: 6.576
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009612458.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1101.21.1e-3167158291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+  +++ +r+r+ tr+gCka l vk +++gkw+v+++++eHnHel+p
  XP_009612458.1  67 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKAALSVKIQDSGKWVVSSFVKEHNHELVP 158
                     9***************************************998888545677889***********************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.5E-3067158IPR004330FAR1 DNA binding domain
PfamPF105512.7E-31279371IPR018289MULE transposase domain
PfamPF044341.3E-12547593IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.288559595IPR007527Zinc finger, SWIM-type
SMARTSM005755.5E-10570597IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    Send to blast
MENEVIEFDI GLGGGGGSED GDGDDVLDEE NVTSCFAAVR SYSPQGDLDL EPYEGMEFES  60
EEAAKAFYNS YARRVGFSTR VSSSRRSRKD GAIIQRSFVC AKEGFRNLNE KRTKDREIKR  120
PRTITRVGCK AALSVKIQDS GKWVVSSFVK EHNHELVPPD QVHCLRSHRQ ISGPAKTLID  180
TLQAAGMGPR RIMSALIKEY GGISKVGFTE VDCRNYMRNN RQRSLEGDIQ LLLDYLKQMH  240
SQNPGFFYAV QGDEDQCTGN VFWADSKARS NYSYFGDTVT FDTTYRSNRY RLPFAPFTGV  300
NHHGQPVLFG CAFLINESEA SFIWLFKTWF AAMTGQPPLS MTTDHDAVIR SALMQVFPET  360
RHRFCKWHIF KKCQEKLSHV FLEHPNFEAD FHKCVNLTES TEEFESCWLS LVDKYELRDH  420
DWLQAIYLDR RQWVPVYLRD AFFAEMSITQ CSDSMNSYFD GYVNASTSLN QFFKLYEKAA  480
ESRTEKEVKA DYDTMNTFPV LKTPSPMEKQ ASEVYTRKLF MRFQEELVGT LTFMANKVED  540
DGLVTTYQVA KFGDDHRAYY VRFNVLEMKA TCSCQMFQFS GLLCRHILAV FRVTNVLTLP  600
FHYILKRWSR SAKSSVALED RVSDVINYYL ESHTVRYNIL RHEAFKFVEE GAESVDSYAV  660
AMAALEVALN KVALAAKHDG RISLVNGHCR EHFTRNWVHA NYNIEDEQRS LACPLSEDDM  720
DAKIQELSYQ LDCANRKCEI YRANLYSVLK DIEDHKQQLS IKVQNIKLSL KDGL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009612458.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1S3YIE10.0A0A1S3YIE1_TOBAC; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_009612458.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]