PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009609579.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 234aa    MW: 26973.9 Da    PI: 5.1122
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009609579.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-1999149255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y GVr ++ +g+++AeIrd + ng   r++lg+f+taeeAa a+++a+++++g
  XP_009609579.1  99 HYIGVRKRP-WGKYAAEIRDSTRNG--IRVWLGTFDTAEEAALAYDQAALSMRG 149
                     799******.**********44465..*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-3399163IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-2999158IPR001471AP2/ERF domain
PfamPF008478.4E-1499149IPR001471AP2/ERF domain
PROSITE profilePS5103221.79999157IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-2299158IPR016177DNA-binding domain
CDDcd000188.66E-2899157No hitNo description
PRINTSPR003678.1E-10100111IPR001471AP2/ERF domain
PRINTSPR003678.1E-10123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSSNSSPLEI DTSFSHSNFF FLQDQSPILQ WDDDLFFNDP WFDDDQSPII PCNSEKDENH  60
QVFEESSDNT IMSKGSSHGQ ELEEVTSQEE KEKEEEEKHY IGVRKRPWGK YAAEIRDSTR  120
NGIRVWLGTF DTAEEAALAY DQAALSMRGP WSLLNFPLEK VKKSLEKIEY SCKDGLSPAA  180
VLKATHKTRR VKHKRSSRKK KNKETHNVIV FEDLGAELLE ELLMTSSQHS CRRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2898158161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6557380.0AY655738.1 Nicotiana tabacum ERF transcription factor 5 (ERF5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313204.11e-175ethylene-responsive transcription factor 1B-like
RefseqXP_009609579.11e-175PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y92e-49ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLQ5Y8361e-174Q5Y836_TOBAC; ERF transcription factor 5
STRINGXP_009609579.11e-174(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.17e-30ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]