PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009609279.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 871aa    MW: 99215.9 Da    PI: 6.416
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009609279.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR123.61.7e-071001306090
            FAR1  60 tgCkaklkvkkekdgkwevtkleleHnHela 90 
                      +C+a+l+v+++ ++kw+vtk  +eH+H+l+
  XP_009609279.1 100 ESCDAMLRVELKGQNKWVVTKYMKEHSHSLV 130
                     68***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-599130IPR004330FAR1 DNA binding domain
PfamPF105511.7E-26268359IPR018289MULE transposase domain
PfamPF044342.3E-9546580IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.189546582IPR007527Zinc finger, SWIM-type
SMARTSM005751.8E-6557584IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 871 aa     Download sequence    Send to blast
MDVEVIDVEE GNMQHQGGIT DDGDDEPSES GEANVNGRSN APERDEVVEP QTGMVFHSED  60
QAKNFYDEYA RHLGFTTHVY QFNRLKTDFL CNGLRTVYGE SCDAMLRVEL KGQNKWVVTK  120
YMKEHSHSLV HPNKVHYHTS HRHFAVAKKN GPENNQGVGI VPSGVMYVSV DGNRIPVEIN  180
RGAKSTRLAE SDQTVKDTVP QSFSPRQCNQ RRTLGRDAQN LLDYFKKMQA ENPGFYYAIQ  240
LDEDNRMANV FWADARSRNA YSHFGDAVIL DTMYRVNQCR VPFAPFTGVN HHGQTILFGC  300
ALLLDESEAT FVWLFKTFLA AMNDRAPVSI ITDLDTVIQS AVAQVFPGTR HCINKWHVLR  360
GGQDRMAHVC HMYPNFQVEL YNCINLTETV EEFESYWETI LEKYDLKKND WLQSIYNTRR  420
QWVPAYFRDT FFAALSPNQE YECSFFDGYV NQQITLPLFF RQYERALENS FEKEIEADFD  480
TICTTPPLRT PSPMEKQAAT LYTKKIFLKF QEELVETFVY TANRIDGDGA LSTFRVAKFE  540
DDQKAYIVSL NISELKANCS CQMFECSGIL CRHILTVFTV TNVLTLPSHY ILKRWTINAK  600
CRAESDEHVQ LHGTESMAHK YNSLCREAIR YAEEGAVVQE TYNAALAALK EGGKKVALAK  660
RNVANPPSSQ VSGVGYDDRR TSASAPEMTP LLWPRQDEMT KRFNLNDTGI PARTIADLNA  720
QRMAPVSLHR DDGHADNTVI LPCLKSMTWV MENKTSTPAN RVAVINLKLQ DYNRTPSRES  780
EVKFQLSRVT LEPMLKSMAY ISEQLSTPAN RVAVINLKLQ DTETTSGESE VKFQVSRDTL  840
AAMLRSMAYI REQLSNTVES QLENPAKKQR K
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609279.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_016508483.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X2
RefseqXP_018628643.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A1S4D5710.0A0A1S4D571_TOBAC; protein FAR1-RELATED SEQUENCE 3-like isoform X2
STRINGXP_009609279.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]