PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009609087.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 354aa    MW: 39794.2 Da    PI: 7.5496
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009609087.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00084147169123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  XP_009609087.1 147 YECKTCNRTFPSFQALGGHRASH 169
                     99**********99999998887 PP

2zf-C2H214.20.00013234256123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  XP_009609087.1 234 HTCSYCGAEFNSGQALGGHMRRH 256
                     79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.12E-8146169No hitNo description
PfamPF139123.3E-13146171IPR007087Zinc finger, C2H2
SMARTSM003550.052147169IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.843147174IPR007087Zinc finger, C2H2
PROSITE patternPS000280149169IPR007087Zinc finger, C2H2
SuperFamilySSF576673.12E-8229256No hitNo description
PROSITE profilePS5015710.221234261IPR007087Zinc finger, C2H2
SMARTSM003550.0084234256IPR015880Zinc finger, C2H2-like
PfamPF139127.4E-12234258IPR007087Zinc finger, C2H2
PROSITE patternPS000280236256IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
METPQEEVVG VSKDLSHIVK GKRTKRLRPQ SPVPFTLVAH SSTGDNGGDR IINNNNNNNI  60
SQSLVTSAEN FPNDDLPTEE EEETAKCLIL LSQGGQPYRQ RFIESPPKKL FDLFNDDMGL  120
YQSKFNSKRY VETTNIGNGA RAGTYVYECK TCNRTFPSFQ ALGGHRASHK KPKPLTIEPK  180
KAFFYFSDQD EPSPTTNYKH NNNINKLSPL SPLSTQFSNF NMESPNNKSS PRIHTCSYCG  240
AEFNSGQALG GHMRRHRGGA NTSLCLSPLS TQAFSFEETP NNLKKPRNIG LSLDLNLPAP  300
EDQNHESRNL QYPPKYPIAI EQEQDQEQTQ KQQQQQEQTA LVLSTTPQLI DCHY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609087.10.0PREDICTED: zinc finger protein ZAT5
TrEMBLA0A1S3ZY080.0A0A1S3ZY08_TOBAC; zinc finger protein ZAT5-like
STRINGXP_009609087.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40152343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.12e-54C2H2 family protein