PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009608328.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 508aa    MW: 57076.8 Da    PI: 6.4728
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009608328.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS353.23.9e-1081495032374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     ++ LlecA a+s ++l +a+++L +l +++sp+g +  +R++ yf++A+a+r+ +s+ ++++ l   ++       +  a+++f+++sP++kf+h
  XP_009608328.1 149 ITHLLECAVAISVDNLGEAHRMLLELTQMSSPYGpSCAERVVVYFAKAMASRVINSWLGICSPLINYKS-------VHCAFQVFNNISPFIKFAH 236
                     678*******************************9999**********************986644443.......457899************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +t NqaIlea+++ +rvHiiD di+qGlQWpaL++ La+R egpp++ +Tg+g     s e l etg++L++fA++lg++fef++ + k++ +l+
  XP_009608328.1 237 FTSNQAILEAFHRRDRVHIIDVDIMQGLQWPALFHILATRIEGPPHVTMTGMGT----SMELLIETGKQLSSFAKRLGMSFEFHP-IGKKIGELD 326
                     ******************************************************....9**************************.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     + +L++++gEa+a+++    h+l+d +++  +    +++l++++sP+v+++veqe+ + ++sFl+rf+ +l+yys++fdsl a l+++++ r++v
  XP_009608328.1 327 ITMLQIRRGEAIAIHWLQ--HSLYDATGPDWK----TMRLLQEVSPRVITLVEQEIPL-GGSFLDRFVGSLHYYSTIFDSLGAFLHSDDSSRHNV 414
                     *****************9..999999999888....**********************.789********************************* PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     E+ ll rei n++a  g +r+ +  ++++Wr+ l++ GF +vp+s++a++qa+l+l++++ ++gy++ + +g+l lgWkd +L+++SaW+
  XP_009608328.1 415 EHGLLYREINNILAIGGPARNGE-DKFKHWRSELSRNGFMQVPMSTNAMAQAQLILNMFPpVHGYSLVQGDGTLKLGWKDTSLYTASAWT 503
                     *******************7665.55***************************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.477122482IPR005202Transcription factor GRAS
PfamPF035141.4E-105149503IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MLKGGSEVIH QHGALDSMQQ SNEHWDCASL VGFPGITSAP NYPSKPITDR GNNPERNELS  60
QWVEHVTRQL IEDFPENETE AMTYQDNIVP ALLGELRSKK VARRNSSESM EQQHQWNSHD  120
LARDENNMNI NETGTKGMNG LDDQGLNLIT HLLECAVAIS VDNLGEAHRM LLELTQMSSP  180
YGPSCAERVV VYFAKAMASR VINSWLGICS PLINYKSVHC AFQVFNNISP FIKFAHFTSN  240
QAILEAFHRR DRVHIIDVDI MQGLQWPALF HILATRIEGP PHVTMTGMGT SMELLIETGK  300
QLSSFAKRLG MSFEFHPIGK KIGELDITML QIRRGEAIAI HWLQHSLYDA TGPDWKTMRL  360
LQEVSPRVIT LVEQEIPLGG SFLDRFVGSL HYYSTIFDSL GAFLHSDDSS RHNVEHGLLY  420
REINNILAIG GPARNGEDKF KHWRSELSRN GFMQVPMSTN AMAQAQLILN MFPPVHGYSL  480
VQGDGTLKLG WKDTSLYTAS AWTSPNSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-501485024374GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009608328.10.0PREDICTED: protein SCARECROW-like
SwissprotQ9M3841e-143SCR_ARATH; Protein SCARECROW
TrEMBLM1DDZ60.0M1DDZ6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000875040.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122912023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-144GRAS family protein