PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009605567.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 94aa    MW: 10836.2 Da    PI: 9.7136
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009605567.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.41e-10449345
                     SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwq 45
                     +WTt   +++ +a  ++ +g    +W  Ia+++g g++ +++k ++ 
   XP_009605567.1  4 NWTTKQNKRFEEALVMYDKGtsseRWQNIAKYVG-GKSVEEVKRHYE 49
                     8*********************************.**********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.7E-6154IPR001005SANT/Myb domain
PROSITE profilePS5129312.916156IPR017884SANT domain
Gene3DG3DSA:1.10.10.602.6E-5358IPR009057Homeodomain-like
SuperFamilySSF466893.67E-13459IPR009057Homeodomain-like
PfamPF002495.4E-8449IPR001005SANT/Myb domain
CDDcd001671.39E-6452No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MATNWTTKQN KRFEEALVMY DKGTSSERWQ NIAKYVGGKS VEEVKRHYEL LVKDITQIEN  60
GQVPLPNYRT TTAESNARGG YANEQRLLKN LSLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-255941193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605567.12e-64PREDICTED: protein RADIALIS-like 1
RefseqXP_016512361.12e-64PREDICTED: protein RADIALIS-like 1
SwissprotF4JVB82e-32RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A1S4DG804e-63A0A1S4DG80_TOBAC; protein RADIALIS-like 1
STRINGXP_009605567.16e-64(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-34RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]