PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009603158.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 501aa    MW: 55537.8 Da    PI: 9.6832
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009603158.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000126585323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C+ C+k F r  nL+ H r H
  XP_009603158.1 65 CEVCNKGFQREQNLQLHRRGH 85
                    *******************88 PP

2zf-C2H214.69.3e-05140162123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H +t+
  XP_009603158.1 140 FKCEKCSKKYAVQSDWKAHTKTC 162
                     89*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.5E-66285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.18E-76285No hitNo description
SMARTSM003550.0256385IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.976385IPR007087Zinc finger, C2H2
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SMARTSM00355240105135IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.5E-5128161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.18E-7135160No hitNo description
SMARTSM0035588140160IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MNIQQEVLLQ KQQYSLAPSS SMVQTQAQAA PTKKRRNQPG TTPYPDAEVI ALSPKTLMAT  60
NRFLCEVCNK GFQREQNLQL HRRGHNLPWK LKQKNTKEVV KRKVYLCPEI TCVHHETSRA  120
LGDLTGIKKH YFRKHGEKKF KCEKCSKKYA VQSDWKAHTK TCGTREYKCD CGTIFSRRDS  180
FITHRAFCDA LAQETARNPV PNFSTIGSHL YGSNSNINLG NFSKMQNSTI SDQKLSLGNT  240
NHNLIGTSNI GSSTSNSFFF QESNQDYANI KPIHSLMQLP NFHNNNMFNL NFFQNNDGNI  300
NLPSGILGDQ NISCSIPSLY GSQVQNHNLN NTTSSVAPMS ATALLQKAAQ IGSTTSNIST  360
TASLLKAFGN STNGGNSSSS GTKSDHQAVN FGDIFSDHSE NHLPEINGEA GNFGPTGDIV  420
NVFNAYGHDQ NDYGGGYNKA TKLNFEQQQH QLPLQKKQLT RDFLGVGEIV RRSMSGGFSS  480
QREQQQQQQS KQGFASAGNF Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-33136197364Zinc finger protein JACKDAW
5b3h_F4e-33136197364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603158.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like isoform X1
RefseqXP_016509335.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like
RefseqXP_018626985.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like isoform X1
SwissprotQ8GYC11e-123IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A1S4D7B80.0A0A1S4D7B8_TOBAC; protein indeterminate-domain 5, chloroplastic-like
STRINGXP_009603158.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-102indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]