PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009600856.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 468aa    MW: 51526.4 Da    PI: 8.7834
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009600856.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.8e-17163212155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_009600856.1 163 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 212
                     78*******************......55************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-16163220IPR016177DNA-binding domain
PfamPF008475.3E-9163212IPR001471AP2/ERF domain
CDDcd000182.13E-11164221No hitNo description
PROSITE profilePS5103217.794164220IPR001471AP2/ERF domain
SMARTSM003804.9E-32164226IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-17164220IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-6255299IPR016177DNA-binding domain
CDDcd000183.48E-12255298No hitNo description
SMARTSM003802.4E-11256304IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MLDLNVSAVS VNSNCDETDP NTNTLFFKDE YSAGTSNTTA SSSVVNAPVA GDEDSNSSSV  60
HHGSKRAHHS LSTLNFSILK SDRAIEIEDD MSTDDVLTRQ LFPVKNESQG QGTRIQGQSQ  120
CWLNLSVPES GGREETGIYK PPAPAPAQQP VKKSRRGPRS RSSQYRGVTF YRRTGRWESH  180
IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGVDADINFN IIDYEEDMEQ MKNLSKEEFV  240
QVLRRQSTGF SRGNSKYRGV TLHKYGRWEA RMGQFLGKKA YDKAAIKCNG REAVTNFEPN  300
TYEQDIKEDN KDGGSGQNLD LNLWISPPLA GPKRNEIGRN VHFNFGAREM VIGRRFEIAN  360
SSTAPLGPPT ASKLSLLTGV YPGFSPHNME GAMMKVEATS SPGFPNWAWK IHSQGVVTPV  420
PVFSSSAASS GFSTATTMYP NTLIPPGNQL RLPTNSTFQH PPVTLNIS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009600856.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
SwissprotQ9SK031e-92RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A1S3YR750.0A0A1S3YR75_TOBAC; ethylene-responsive transcription factor RAP2-7-like isoform X1
STRINGXP_009600856.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.15e-88related to AP2.7