PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009597659.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 201aa    MW: 22379.7 Da    PI: 7.3862
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009597659.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.5e-17117167255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+++AeIrdp   + k  r++lg+f+   +Aa+a++ a+ k++g
  XP_009597659.1 117 NYRGVRRRP-WGKFAAEIRDP---NkKGSRIWLGTFDADVDAARAYDCAAFKMRG 167
                     59*******.**********9...4345**********99*************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.87E-31116175No hitNo description
SuperFamilySSF541713.73E-22117176IPR016177DNA-binding domain
SMARTSM003808.8E-37117181IPR001471AP2/ERF domain
PROSITE profilePS5103224.078117175IPR001471AP2/ERF domain
PfamPF008475.8E-12117167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-31117176IPR001471AP2/ERF domain
PRINTSPR003674.5E-13118129IPR001471AP2/ERF domain
PRINTSPR003674.5E-13157177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MTTQEEGLTL ELIRQHLLED FTSKESFIDS LNSCFTDHIS PTLTSVKTEP STSNNSLSDS  60
PTSYPNSPIS HYFSDFPEFN TNSDTNLSPT SDSCVSSRST ISSDTMSGNN NENDKKNYRG  120
VRRRPWGKFA AEIRDPNKKG SRIWLGTFDA DVDAARAYDC AAFKMRGRKA ILNFPLDAGK  180
SGAPANIGRK RRRDQGMEML C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-28116176161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188192RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8744230.0KJ874423.1 Nicotiana tabacum ethylene response factor 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009597659.11e-149PREDICTED: ethylene-responsive transcription factor ERF106-like
TrEMBLA0A1S4CGC11e-130A0A1S4CGC1_TOBAC; ethylene-responsive transcription factor ERF106-like
STRINGXP_009597659.11e-148(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-49ERF family protein