PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009597481.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 264aa    MW: 29474.7 Da    PI: 7.1436
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009597481.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-1857105355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr+++ +g+++AeIrdp+    + +r++lg+f tae Aa a+++a+++++g
  XP_009597481.1  57 YRGVRQRP-WGKYAAEIRDPK----KaARVWLGTFETAEAAAIAYDEAALRFKG 105
                     9*******.**********94....45************************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.74956113IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-2156114IPR016177DNA-binding domain
SMARTSM003804.4E-3656119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3156114IPR001471AP2/ERF domain
CDDcd000185.57E-2057114No hitNo description
PRINTSPR003679.9E-115768IPR001471AP2/ERF domain
PfamPF008477.1E-1257105IPR001471AP2/ERF domain
PRINTSPR003679.9E-117995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MYSAARSQQD MSTMVAVLSQ VIGNTSTPPL TTLSHRSLQN QPQPNPQQGN IERRRLYRGV  60
RQRPWGKYAA EIRDPKKAAR VWLGTFETAE AAAIAYDEAA LRFKGNKAKL NFPERVLAKT  120
EFGYLTTTPQ EQLIPAANFL PTCNFKPFSQ LQHYPINVDH YAQLLRSGNN NADSSRFYHT  180
SGFDGEALNT AETANSWLDP PLSSTFISES LSMTSLVQQA SHVQQEPSNY QQVDENILRF  240
SSHFGNSSSS GPIESCNNLE DDPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2657116363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009597481.10.0PREDICTED: ethylene-responsive transcription factor ERF113-like
RefseqXP_009597482.10.0PREDICTED: ethylene-responsive transcription factor ERF113-like
RefseqXP_016478342.10.0PREDICTED: ethylene-responsive transcription factor ERF113-like
SwissprotQ9FH543e-45EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A1S4ANM50.0A0A1S4ANM5_TOBAC; ethylene-responsive transcription factor ERF113-like
STRINGXP_009597481.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.11e-32ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]