PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009590871.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 577aa    MW: 63350.8 Da    PI: 9.1867
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009590871.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-057496123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C+k F r  nL+ H r H
  XP_009590871.1 74 FVCEVCNKGFQREQNLQLHRRGH 96
                    89*******************88 PP

2zf-C2H215.16.7e-05150172123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC++C+k +  +s+ k H +t+
  XP_009590871.1 150 YKCEKCSKKYAVQSDWKAHTKTC 172
                     9********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.0E-67396IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.8E-87396No hitNo description
PfamPF121713.8E-57496IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00417496IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0947496IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SMARTSM00355130115145IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-5138171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.8E-8145170No hitNo description
SMARTSM0035571150170IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MAAGPSSAVF LAMREEEQNQ QMKQQQQQQE LLIQQQPQQQ QAPQKKRRNQ PGTPNPDAEI  60
IALSPKTLMA TNRFVCEVCN KGFQREQNLQ LHRRGHNLPW KLKQKSTKEV KRKVYLCPEP  120
TCVHHDPSRA LGDLTGIKKH YSRKHGEKKY KCEKCSKKYA VQSDWKAHTK TCGTREYKCD  180
CGTLFSRRDS FITHRAFCDA LAQESARNPP SLSSIGSHLY GSNNNMSLGL SKMGSQISDH  240
QHHSSNSTDI LHFGSNIKTS TGQFDHNNLM GTSIGSAFRP STSFFLPADQ SNHQDYAANK  300
PSIHGLMQLP DLHNNGNNNS SPSVASMFNL NFFQNSNNNS ENVGNSNISG GGGGLLLPSH  360
QFSNSSGDGS NNSSNMFSAG SLLGTDHHIS SSSIPSLYGN NLNNNNNTAS PMSATALLQK  420
AAQMGSTTSN NNSASLLKAF GSSSSATKSD IHPPPPVNFG NVVYGDPLSE NHLHDLVVNA  480
YGNNDQNQQN NYGNSFEQQQ PPQKKQMLNN FSMENMGTEQ ANRLTRDFLG VGEIVRSMSG  540
GFGSSHRDHQ QQQQMNTLDS KAPQSHHQSF GGAGNFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-34146225372Zinc finger protein JACKDAW
5b3h_F8e-34146225372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-110HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009590871.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like
RefseqXP_009590872.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like
SwissprotQ9ZUL31e-131IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A1S4B1G40.0A0A1S4B1G4_TOBAC; protein indeterminate-domain 5, chloroplastic-like isoform X1
TrEMBLA0A1U7X6140.0A0A1U7X614_NICSY; zinc finger protein JACKDAW-like
STRINGXP_009590871.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-101indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]