PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016514595.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 161aa    MW: 17757.3 Da    PI: 7.5013
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016514595.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601192.8e-3751051100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+k+C++apyf  eq  ++fa+vhk+FGasn +kll ++p ++r +++ +l+yeA ar+rdPvyG+v++i++lqqq+ +l+ael
  XP_016514595.1   5 PCGACKYLRRKCVKGCIFAPYFDTEQgFAHFAAVHKVFGASNASKLLLSIPANKRLETVITLCYEALARVRDPVYGSVAHIFTLQQQVVTLQAEL 99 
                     7***********************9967******************************************************************* PP

          DUF260  95 allkee 100
                     a+++++
  XP_016514595.1 100 AYVQAR 105
                     **9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.3664106IPR004883Lateral organ boundaries, LOB
PfamPF031957.0E-365103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MSSGPCGACK YLRRKCVKGC IFAPYFDTEQ GFAHFAAVHK VFGASNASKL LLSIPANKRL  60
ETVITLCYEA LARVRDPVYG SVAHIFTLQQ QVVTLQAELA YVQARLSTLQ SASTEMAASY  120
STILSVSMDP LFDTTVLHHV LDQQLDNCDL HSVARDFDSR H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-332998104LOB family transfactor Ramosa2.1
5ly0_B2e-332998104LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016514595.11e-117PREDICTED: LOB domain-containing protein 19-like
SwissprotO221327e-57LBD19_ARATH; LOB domain-containing protein 19
TrEMBLA0A1S4DMH31e-116A0A1S4DMH3_TOBAC; LOB domain-containing protein 19-like
STRINGXP_009604914.11e-115(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.13e-59LOB domain-containing protein 19