PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016513075.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 87aa    MW: 9699.8 Da    PI: 7.5104
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016513075.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.78.7e-111054244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     g WT+e  + + +a + + ++   +W+ +ar +g g+t++++k ++
   XP_016513075.1 10 GYWTAEQNKAFEKALAVYDKDtpdRWSNVARAVG-GKTAEEVKRHY 54
                     78********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.3E-9860IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-5858IPR009057Homeodomain-like
SuperFamilySSF466899.72E-141066IPR009057Homeodomain-like
PfamPF002496.1E-81054IPR001005SANT/Myb domain
PROSITE profilePS500906.6671058IPR017877Myb-like domain
CDDcd001671.28E-81254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MASSSMSCHG YWTAEQNKAF EKALAVYDKD TPDRWSNVAR AVGGKTAEEV KRHYEILVQD  60
VMSIENGRVP FPNYRTTTGG LTNTADK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-36181180RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594360.15e-61PREDICTED: protein RADIALIS-like 1
RefseqXP_016513075.15e-61PREDICTED: protein RADIALIS-like 1
SwissprotF4JVB82e-37RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A1S4DI481e-59A0A1S4DI48_TOBAC; protein RADIALIS-like 1
STRINGXP_009594360.12e-60(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.18e-40RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]