PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016512749.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 312aa    MW: 35291 Da    PI: 5.0667
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016512749.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.93.4e-38101101100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     aCaaCk++rrkC+++Cvlapyfpa+qpk f+n+h+lFG+ n++k+l++l++++ + dam+s+++e++++ r PvyG+v+ i +l+qql+ + +el
  XP_016512749.1  10 ACAACKYQRRKCSSECVLAPYFPANQPKMFQNAHRLFGVCNIMKILRQLDDDDqKADAMKSIIFESDMWERFPVYGCVEYICHLRQQLQLALEEL 104
                     7************************************************655549***************************************9 PP

          DUF260  95 allkee 100
                     +++ ++
  XP_016512749.1 105 HYVYAQ 110
                     998766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.0749111IPR004883Lateral organ boundaries, LOB
PfamPF031955.7E-3710106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MTVKGGTSPA CAACKYQRRK CSSECVLAPY FPANQPKMFQ NAHRLFGVCN IMKILRQLDD  60
DDQKADAMKS IIFESDMWER FPVYGCVEYI CHLRQQLQLA LEELHYVYAQ LALYREQQQQ  120
QLALQRGVTS EIPFVNGISM GPFFTSEGEC SEGGPKTNLL GSDSLFGHNS SITFAASDHV  180
IFGFGVRDDH QRDISHEYEC LINPFNNIMA DDRQSYVETK EACDSSSESS WKDTQSLENL  240
SQNELRNAAA CLSLTSRVTL ETIAVALQLW GGDLVRSARE LISICSLYRF FDSELLRHVP  300
DLTLVVLEHL RM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-2321144114LOB family transfactor Ramosa2.1
5ly0_B1e-2321144114LOB family transfactor Ramosa2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016512749.10.0PREDICTED: LOB domain-containing protein 11-like
TrEMBLA0A1S4DHL20.0A0A1S4DHL2_TOBAC; LOB domain-containing protein 11-like
STRINGXP_009768780.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.11e-36LOB domain-containing protein 27