PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016509033.1
Common NameH1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TALE
Protein Properties Length: 340aa    MW: 38151.1 Da    PI: 5.2468
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016509033.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-092683022155
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     k +yps++++  LA+++gL+++q+ +WF N+R ++
  XP_016509033.1 268 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 302
                     569*****************************885 PP

2ELK41.23.4e-14222243122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK qLlrKYsgyLgsLkqEF+
  XP_016509033.1 222 ELKGQLLRKYSGYLGSLKQEFM 243
                     9********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.2E-2085129IPR005540KNOX1
PfamPF037905.1E-2387126IPR005540KNOX1
SMARTSM012565.8E-26134185IPR005541KNOX2
PfamPF037912.4E-21138184IPR005541KNOX2
PROSITE profilePS5121311.174222242IPR005539ELK domain
SMARTSM011882.8E-8222243IPR005539ELK domain
PfamPF037895.5E-11222243IPR005539ELK domain
PROSITE profilePS5007112.957242305IPR001356Homeobox domain
SMARTSM003891.2E-12244309IPR001356Homeobox domain
SuperFamilySSF466891.41E-19244319IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.8E-28247307IPR009057Homeodomain-like
CDDcd000862.62E-12254306No hitNo description
PfamPF059208.0E-17262301IPR008422Homeobox KN domain
PROSITE patternPS000270280303IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEGGGSSGNT SCLMGYNGDD NNNNSGNAAL CPPPMMMMMM PPPINNNNAE SSNNIGGNNN  60
NNILFLPFMD NNNNNPHEDA NCSSTSIKSK IMAHPHYPRL LSAYVNCQKI GAPPEVVARL  120
EEVCATSATI GRNSGGIIGE DPALDQFMEA YCEMLTKYEQ ELSKPFKEAM VFLSRIECQF  180
KALTLTSSCE SALGEAIDRN GSSEEEVDVN NGFIDPQAED QELKGQLLRK YSGYLGSLKQ  240
EFMKKRKKGK LPKEARQQLL DWWTRHYKWP YPSESQKLAL AESTGLDQKQ INNWFINQRK  300
RHWKPSEDMQ FVVMDAAHPH YYMDNVLGNP FPMDMTPTLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237246LKQEFMKKRK
2243247KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1694930.0AY169493.1 Nicotiana tabacum Knotted-1-like homeobox protein H1 (H1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613678.10.0PREDICTED: homeobox protein knotted-1-like LET6 isoform X2
RefseqXP_016509033.10.0PREDICTED: homeobox protein knotted-1-like LET6 isoform X2
SwissprotO222991e-157LET6_SOLLC; Homeobox protein knotted-1-like LET6
TrEMBLQ8GUS60.0Q8GUS6_TOBAC; Knotted-1-like homeobox protein H1
STRINGPGSC0003DMT4000430831e-166(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-138KNOX/ELK homeobox transcription factor