PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016507963.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 196aa    MW: 21756.3 Da    PI: 7.1475
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016507963.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601352.7e-4225124199
          DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +CaaCk+lrrkC ++ C++apyfp e+p kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el
  XP_016507963.1  25 PCAACKFLRRKCLPGnCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEIQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKEL 119
                     7***********8855******************************************************************************* PP

          DUF260  95 allke 99 
                     +++++
  XP_016507963.1 120 DATNA 124
                     99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.08624126IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-4125123IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MNHSSSNHLH RTEIMASSSS YSNPPCAACK FLRRKCLPGN CIFAPYFPPE EPTKFANVHK  60
IFGASNVSKL LNEIQPHQRE DAVNSLAYEA EARMKDPVYG CVGAISVLQR QVIRLQKELD  120
ATNADLMRYI NPSGGIMNHQ QRSNLNYGRI TGPVDGTTTG FDQNYGFCIP NYSPNTWNNT  180
TISGNHNPEG DDDSSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-63161292114LOB family transfactor Ramosa2.1
5ly0_B2e-63161292114LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009766717.11e-148PREDICTED: LOB domain-containing protein 25-like isoform X1
RefseqXP_009766723.11e-148PREDICTED: LOB domain-containing protein 25-like isoform X1
RefseqXP_016507963.11e-148PREDICTED: LOB domain-containing protein 25-like isoform X1
SwissprotQ8L8Q35e-67LBD25_ARATH; LOB domain-containing protein 25
TrEMBLA0A1S4D3Q41e-146A0A1S4D3Q4_TOBAC; LOB domain-containing protein 25-like isoform X1
TrEMBLA0A1U7VF651e-146A0A1U7VF65_NICSY; LOB domain-containing protein 25-like isoform X1
STRINGXP_009766717.11e-147(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.12e-69LOB domain-containing protein 25
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]