PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016504673.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 201aa    MW: 22686.4 Da    PI: 7.5042
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016504673.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-172265148
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48
                    ++y+GVr+++ +gr++AeIr p++   ++r++lg+f+taeeAa a++ 
  XP_016504673.1 22 TKYHGVRRRP-WGRYAAEIRNPNT---KQRHWLGTFDTAEEAALAYDI 65
                    69********.**********933...5******************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.76E-282280No hitNo description
PfamPF008479.4E-122264IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-262380IPR001471AP2/ERF domain
PROSITE profilePS5103220.5742381IPR001471AP2/ERF domain
SMARTSM003806.6E-292387IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-182381IPR016177DNA-binding domain
PRINTSPR003673.3E-92435IPR001471AP2/ERF domain
PRINTSPR003673.3E-94662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MENIIPQLHV RNLGRRSSRH STKYHGVRRR PWGRYAAEIR NPNTKQRHWL GTFDTAEEAA  60
LAYDISSIAF CGIENARTNF VYPFMSFPSS SSQPPPSPPP PPPPPPPSTP ELEVIENEED  120
DNDNDNDDDE ICVYANVLLV TRISRGGINA MHSTLQEHWC RCFSLQLKGN VLPKVSSNTN  180
LSRRLGMQGG RQQICSSWLM S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-141472564Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9145253e-91CU914525.3 S.lycopersicum DNA sequence from clone LE_HBa-149O17 on chromosome 4, complete sequence.
GenBankHG9755163e-91HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016504673.11e-150PREDICTED: ethylene-responsive transcription factor ERF087-like
TrEMBLA0A1S4CU831e-148A0A1S4CU83_TOBAC; ethylene-responsive transcription factor ERF087-like
STRINGXP_009781053.12e-60(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.13e-26ERF family protein