PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016503964.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 367aa    MW: 41639.6 Da    PI: 7.5426
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016503964.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.22.3e-1085125545
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                     k++rr+++NReAAr+sR RKka++++Le+   +L +  ++L
  XP_016503964.1  85 KVQRRLAQNREAARKSRMRKKAYVQQLETSRMKLAQLEMEL 125
                     99**************************9776666665544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-581141IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.23283127IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.31E-785124No hitNo description
Gene3DG3DSA:1.20.5.1705.4E-885128No hitNo description
PfamPF001702.1E-785125IPR004827Basic-leucine zipper domain
PROSITE patternPS00036088103IPR004827Basic-leucine zipper domain
PfamPF141442.1E-28172244IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MNMSSPSTQF APTTRMGIFE PFHHMSIWED TFRGDIMPGT GACMVAQPND RVNDRVDDKS  60
GYTSSEQLIP SGSEDNQAGK SVSEKVQRRL AQNREAARKS RMRKKAYVQQ LETSRMKLAQ  120
LEMELERARQ QGLYVLGSNG NMGLSATINP GIAAFEIEYG LWVEEQQKKN VELRNVLQSH  180
VSEMELQLLV ESVLSQYYNL FRMKADAAKA DVFYLMSGMW RTSVERFFLW IGGFKPSELI  240
NVVMPQLEPL SDQQIVKICN LRHCCQQAED ALTQGMDKLQ QTLAQSILTM TTGMGSYSSQ  300
MLSSMEKLEA LESFVNQADH LRHQTLQQMS LILTTRQTAR GLLAFGEYLQ RLRALSSLWA  360
ARPREPT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780690.10.0PREDICTED: transcription factor TGA1
RefseqXP_016503964.10.0PREDICTED: transcription factor TGA1-like
SwissprotQ392371e-153TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A1S4CSG80.0A0A1S4CSG8_TOBAC; transcription factor TGA1-like
TrEMBLA0A1U7X2J30.0A0A1U7X2J3_NICSY; transcription factor TGA1
STRINGXP_009780690.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7802497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-155bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]