PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016503569.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 189aa    MW: 21277.5 Da    PI: 6.295
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016503569.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.96.1e-3715112197
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C+aCk+lrr+C++dC++ p+fp ++p+kf +vh++FGasn++k+l++  p ++reda+ s+vyeA ar+rdPvyG+vg+i+++q+++ +l++el
  XP_016503569.1  15 PCSACKFLRRRCTQDCIFLPHFPTAEPQKFIAVHRIFGASNISKILQQEiPVDNREDAVISMVYEATARLRDPVYGCVGIISAVQKHVFHLQSEL 109
                     7*********************************************87648888****************************************9 PP

          DUF260  95 all 97 
                     +++
  XP_016503569.1 110 NEA 112
                     986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.35714116IPR004883Lateral organ boundaries, LOB
PfamPF031957.1E-3915111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MFFMGSTNKK NKHMPCSACK FLRRRCTQDC IFLPHFPTAE PQKFIAVHRI FGASNISKIL  60
QQEIPVDNRE DAVISMVYEA TARLRDPVYG CVGIISAVQK HVFHLQSELN EALAEAMFLR  120
TQLSDALSLP SLIEGSPFTP ENHEFLHFQK PSEQNAYANA SDALLLLPEA ADHYCLQGTE  180
VLPLPYLDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-391513311126LOB family transfactor Ramosa2.1
5ly0_B2e-391513311126LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-87HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016503569.11e-140PREDICTED: LOB domain-containing protein 25-like isoform X1
SwissprotQ8L8Q31e-41LBD25_ARATH; LOB domain-containing protein 25
TrEMBLA0A1S4CRC51e-138A0A1S4CRC5_TOBAC; LOB domain-containing protein 25-like isoform X1
STRINGSolyc06g082770.2.11e-92(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA131471419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.14e-44LOB domain-containing protein 25
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]