PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016503153.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 128aa    MW: 14740.3 Da    PI: 4.8823
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016503153.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643e-201868255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr ++ +g+++AeIrd ++ng   r++lg++ taeeAa+a+++a+ +++g
  XP_016503153.1 18 RYRGVRKRP-WGKYAAEIRDTNKNG--VRVWLGTYATAEEAARAYDKAAFEMRG 68
                    6********.**********65676..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.69E-281877No hitNo description
Gene3DG3DSA:3.30.730.105.1E-311878IPR001471AP2/ERF domain
PfamPF008472.2E-141868IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-231878IPR016177DNA-binding domain
PROSITE profilePS5103223.9731876IPR001471AP2/ERF domain
SMARTSM003803.0E-361882IPR001471AP2/ERF domain
PRINTSPR003673.5E-111930IPR001471AP2/ERF domain
PRINTSPR003673.5E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MDDQDKSNDN KESREEVRYR GVRKRPWGKY AAEIRDTNKN GVRVWLGTYA TAEEAARAYD  60
KAAFEMRGRF AVLNFPHEYP SFSSSCPLSS SSSVQNGNEV KEVIEFEYLD DKLLEELLGL  120
ESDKTQFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-341511311114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754488e-57HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009621762.13e-91PREDICTED: ethylene-responsive transcription factor ERF098-like
RefseqXP_016503153.13e-91PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC53e-37ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1S4CPI86e-90A0A1S4CPI8_TOBAC; ethylene-responsive transcription factor ERF098-like
STRINGXP_009621762.11e-90(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.12e-22ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]