PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016502449.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 97aa    MW: 11282.6 Da    PI: 9.6434
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016502449.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21e-09653347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      WT++  +++ +a + + ++   +W+  a+ +g g+t++++k ++ k+
   XP_016502449.1  6 TWTPQQNKKFENALAIYDKDtpdRWRNLAKAVGGGKTEEDVKTHYEKL 53
                     7********************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.644154IPR017877Myb-like domain
SMARTSM007171.3E-7356IPR001005SANT/Myb domain
SuperFamilySSF466891.94E-12562IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-4559IPR009057Homeodomain-like
PfamPF002493.7E-7653IPR001005SANT/Myb domain
CDDcd001671.58E-5654No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MASNSTWTPQ QNKKFENALA IYDKDTPDRW RNLAKAVGGG KTEEDVKTHY EKLVEDIKRI  60
ESGQVPLPKY NKPNGGHNNK GYMFNDEEQR LRYLKLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-27397793RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for female gametophyte development. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791349.18e-68PREDICTED: protein RADIALIS-like 5
RefseqXP_016502449.18e-68PREDICTED: protein RADIALIS-like 5
SwissprotQ9SIJ57e-29RADL2_ARATH; Protein RADIALIS-like 2
TrEMBLA0A1S4CNC02e-66A0A1S4CNC0_TOBAC; protein RADIALIS-like 5
TrEMBLA0A1U7XWN92e-66A0A1U7XWN9_NICSY; protein RADIALIS-like 5
STRINGXP_009791349.13e-67(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.14e-31RAD-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yang B, et al.
    RSM1, an Arabidopsis MYB protein, interacts with HY5/HYH to modulate seed germination and seedling development in response to abscisic acid and salinity.
    PLoS Genet., 2018. 14(12): p. e1007839
    [PMID:30566447]