PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016502425.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 285aa    MW: 31452.7 Da    PI: 6.5368
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016502425.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20156205255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a+++a+ +++g
  XP_016502425.1 156 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFNTAEDAARAYDKAAIEFRG 205
                     59*******.**********94....36************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.16E-34155212No hitNo description
SMARTSM003805.1E-38156219IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-32156213IPR001471AP2/ERF domain
PROSITE profilePS5103224.829156213IPR001471AP2/ERF domain
PfamPF008475.6E-14156205IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-22156213IPR016177DNA-binding domain
PRINTSPR003677.4E-12157168IPR001471AP2/ERF domain
PRINTSPR003677.4E-12179195IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MQRSNKRFRE DGTSNSAQNN QQFPRLTGEE EYSVMVSALK NVINGNIPIE NTQHFNLFSP  60
FQYSTATSTA TTVTAYSSPS NSMSTIEQGN VVSPILGVPA EQEPCPFCRI KGCLGCDIFG  120
TTSSAAVNFA ESKVVAADDN KKKSTTISIA KKKKKNYRGV RQRPWGKWAA EIRDPRKAAR  180
VWLGTFNTAE DAARAYDKAA IEFRGPRAKL NFSFADYTET QEQQSTSSSS PQQLPEPQLQ  240
QGNNAEFGNE IWDQLMGDNE IQDWLTMMNF NGDSSDSTGG NVHSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-24155212159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140154KKKSTTISIAKKKKK
2149155AKKKKKN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740210.0AB274021.1 Nicotiana tabacum WRAF1 mRNA for wound-responsive AP2 like factor 1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016502425.10.0PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLA0A1S4CMZ70.0A0A1S4CMZ7_TOBAC; ethylene-responsive transcription factor ERF109-like
STRINGXP_009609381.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-27redox responsive transcription factor 1