PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016499871.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 241aa    MW: 27064.1 Da    PI: 5.4321
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016499871.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-1892142255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++GVr+++ +g+++AeIrd + ng   r++lg+f+++e Aa a+++a+ +++g
  XP_016499871.1  92 SFRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFDSPEAAALAYDQAAFSMRG 142
                     59*******.**********44465..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.38E-1991151No hitNo description
Gene3DG3DSA:3.30.730.102.1E-2992151IPR001471AP2/ERF domain
SMARTSM003809.6E-3892156IPR001471AP2/ERF domain
PROSITE profilePS5103222.78792150IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2293152IPR016177DNA-binding domain
PRINTSPR003671.6E-1293104IPR001471AP2/ERF domain
PfamPF008473.2E-1393142IPR001471AP2/ERF domain
PRINTSPR003671.6E-12132152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDSSSCSSHF FYPMNSDLSS DSSWEWSNLN STNSLPFNLN DSEEMLLFGV LTNAAQETTS  60
ETVTSYHVKE EEVSSKSKVV NEIEEKPAKE KSFRGVRRRP WGKFAAEIRD STRNGVRVWL  120
GTFDSPEAAA LAYDQAAFSM RGTSAILNFP VETVQQSLRD MKCHVDEDCS PVVALKKRHS  180
MRKRSLNSKK SSNSNSKVVR EVKMEKVNVV VFEDLGADYL EQLLSSSSSD QSSCNEAFLP  240
W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2888151164ATERF1
3gcc_A3e-2888151164ATERF1
5wx9_A4e-28881521074Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankNTU811570.0U81157.1 Nicotiana tabacum S25-XP1 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016499871.11e-178PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y97e-70ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A1S4CFH61e-177A0A1S4CFH6_TOBAC; ethylene-responsive transcription factor 1B-like
STRINGXP_009606435.11e-133(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-57ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]