PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016499476.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 222aa    MW: 24597.2 Da    PI: 9.0483
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016499476.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.53.2e-312103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+p+++r+ +++sl+yeA  r+ +Pv+G+vg+++++++q++q+
  XP_016499476.1   2 SCNGCRVLRKGCSENCILRPCLqwietPEAQGHATIFVAKFFGRAGLMSFISAVPRNQRPGLFQSLLYEAAGRTVNPVNGVVGLLWTGNWQICQA 96 
                     6********************************************************************************************** PP

          DUF260  91 kaelall 97 
                     +++++l+
  XP_016499476.1  97 AVDTVLR 103
                     9998775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.6841107IPR004883Lateral organ boundaries, LOB
PfamPF031955.7E-262100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILR PCLQWIETPE AQGHATIFVA KFFGRAGLMS FISAVPRNQR  60
PGLFQSLLYE AAGRTVNPVN GVVGLLWTGN WQICQAAVDT VLRGGTLSPI PELFGKSAEV  120
DEESECTNVF KLQNHTQNTR SKMQKRCRSS DEAAAKVLQL ENLDLSLLTR GFQSEIVHSS  180
LPEKRRSRTP SRKSEVSVTT TCFDSSLGHH QGKQLRLLSL FT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016499476.11e-164PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9FN113e-75LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A1S4CED51e-163A0A1S4CED5_TOBAC; LOB domain-containing protein 37-like
STRINGXP_009630227.11e-161(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-77LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]