PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016498962.1
Common NameNtabSPL9a, SPL9
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 310aa    MW: 32962 Da    PI: 8.6724
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016498962.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP46.87.9e-1555844776
                    SSEEETTT--SS--S-STTTT-------S- CS
             SBP 47 srfhelsefDeekrsCrrrLakhnerrrkk 76
                    + fh+l efD++krsCrrrLa+hnerrrk+
  XP_016498962.1 55 TGFHRLPEFDQGKRSCRRRLAGHNERRRKP 84
                    67**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114111.511784IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.51E-125488IPR004333Transcription factor, SBP-box
PfamPF031106.9E-85683IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MNGLGRSEME LLASASASSS TSTTSTSPDS PPNTLKFGQK IYFEHVGPQH LKSATGFHRL  60
PEFDQGKRSC RRRLAGHNER RRKPPPGSLL SNRYGSLSSS IFENNGRSGS FLVDFTAYPN  120
LTGGAWPNTR SSDRGWDNQS TASGKLLQSH WLNGSENPTS DLVLQGSVAR GANYSGPGII  180
PSGNCFSGVS DSSGALSLLS NESWGSRNQS SSLGVNGLVN TDGGHTVQPS GSHAAPVNHY  240
SGSLWGFKGN EASSSSHAIP PDLGLGHISQ LAVNQYSAEL GMAQHSGRQY MELEHSKGYD  300
SSVQNVHWTL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0732980.0LC073298.1 Nicotiana tabacum NtabSPL9a mRNA for squamosa promoter binding protein NtabSPL9a, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016498962.10.0PREDICTED: squamosa promoter-binding-like protein 9
TrEMBLA0A1S4CCM50.0A0A1S4CCM5_TOBAC; squamosa promoter-binding-like protein 9
STRINGXP_009792000.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45712241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.11e-29squamosa promoter binding protein-like 9
Publications ? help Back to Top
  1. Zhang T,Wang J,Zhou C
    The role of miR156 in developmental transitions in Nicotiana tabacum.
    Sci China Life Sci, 2015. 58(3): p. 253-60
    [PMID:25682394]
  2. Han YY,Ma YQ,Li DZ,Yao JW,Xu ZQ
    Characterization and phylogenetic analysis of fifteen NtabSPL genes in Nicotiana tabacum L. cv. Qinyan95.
    Dev. Genes Evol., 2016. 226(1): p. 1-14
    [PMID:26635304]