PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016497689.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 206aa    MW: 22567.9 Da    PI: 5.0026
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016497689.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.72e-43561551100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpee+r da++s+vyeA+ar+rdPvyG++gvi +lq+q+++l+ae a
  XP_016497689.1  56 PCAACKILRRRCVDKCVLAPYFPPTDPLKFTIAHRVFGASNIIKMLQELPEEQRADAVNSMVYEANARIRDPVYGCAGVICQLQKQISELQAEFA 150
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     + ++e
  XP_016497689.1 151 KSQAE 155
                     99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.44555156IPR004883Lateral organ boundaries, LOB
PfamPF031954.1E-4356153IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MECSDNKTTT ISSLIASSKN SPNIVSATTT SSGLLSPKSI LSAPPFSPPP PVILTPCAAC  60
KILRRRCVDK CVLAPYFPPT DPLKFTIAHR VFGASNIIKM LQELPEEQRA DAVNSMVYEA  120
NARIRDPVYG CAGVICQLQK QISELQAEFA KSQAEILNLK CQNSNLLALV CMEVSEFQEI  180
SSNEYGNTSL FLEDNSVYAA WETLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-43471612116LOB family transfactor Ramosa2.1
5ly0_B8e-43471612116LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755171e-62HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009611728.11e-151PREDICTED: LOB domain-containing protein 1-like
RefseqXP_016497689.11e-151PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR08e-71LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A1S4C9Q31e-149A0A1S4C9Q3_TOBAC; LOB domain-containing protein 1-like
STRINGXP_009611728.11e-150(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-73LOB domain-containing protein 1