PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016496331.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 372aa    MW: 41990.8 Da    PI: 5.488
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016496331.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.21.3e-1187125441
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee.kvkeLeae 41 
                     +k+ rr+++NReAAr+sR+RKka++++Le+ k k L+ e
  XP_016496331.1  87 DKVLRRLAQNREAARKSRLRKKAYVQQLENsKLKLLQLE 125
                     7999*************************8344444443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.5E-584144IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.72686130IPR004827Basic-leucine zipper domain
PfamPF001707.3E-887123IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.3E-788131No hitNo description
Gene3DG3DSA:1.20.5.1701.4E-790133No hitNo description
PROSITE patternPS00036091106IPR004827Basic-leucine zipper domain
PfamPF141441.8E-28175249IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MNSTYTQFVA SKRMGICDPI HQIGMWGDFK NSSFPDTSAT LILEVENCLE NEMPIMEKRP  60
HNETEELSHG TVGTSNRYEP EARKPIDKVL RRLAQNREAA RKSRLRKKAY VQQLENSKLK  120
LLQLEQELER TRQQGQYAGV GLDESQIGYT GTANSGIVAF EMEYGHWVEE QDRQTDELRS  180
ALNSQVGEIE LQLLVEGCLN HYFDLFRMKA AAAHADVLFL MTGTWKTSAE RFFLWIAGFR  240
PSELLKVLTP NVEPLTEQQL RDVCNLMQSC QQAEDALSQG MVKLHQILAE AVAAGTLGDG  300
IILPKMAATI ENLEALVRFV NQADHLRQET LLQMSCILTP QQSAQGLLAL GEYFKRLRAL  360
SSLWTSRTSE PA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8087400.0KJ808740.1 Nicotiana tabacum leucine-zipper transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009617448.10.0PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A-like
RefseqXP_016496331.10.0PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A-like
SwissprotP142320.0TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBLA0A1S4C5590.0A0A1S4C559_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A-like
STRINGXP_009617448.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7802497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.21e-146TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J
    A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems.
    Plant Mol. Biol., 2000. 42(5): p. 679-88
    [PMID:10809441]
  2. Johnson C,Boden E,Desai M,Pascuzzi P,Arias J
    In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor.
    Plant J., 2001. 28(2): p. 237-43
    [PMID:11722767]
  3. Katagiri F,Seipel K,Chua NH
    Identification of a novel dimer stabilization region in a plant bZIP transcription activator.
    Mol. Cell. Biol., 1992. 12(11): p. 4809-16
    [PMID:1406663]
  4. Fromm H,Katagiri F,Chua NH
    The tobacco transcription activator TGA1a binds to a sequence in the 5' upstream region of a gene encoding a TGA1a-related protein.
    Mol. Gen. Genet., 1991. 229(2): p. 181-8
    [PMID:1921969]
  5. Miao ZH,Lam E
    Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants.
    Plant J., 1995. 7(6): p. 887-96
    [PMID:7599649]
  6. Pascuzzi P,Hamilton D,Bodily K,Arias J
    Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor.
    J. Biol. Chem., 1998. 273(41): p. 26631-7
    [PMID:9756903]