PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016495494.1
Common NameNtabSPL6-3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 524aa    MW: 57202.9 Da    PI: 8.8961
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016495494.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.57.1e-42164239277
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     Cqv gC +dls++k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk++
  XP_016495494.1 164 CQVLGCGKDLSSCKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPH 239
                     **************************************************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.8E-33157225IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.565161238IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-38162242IPR004333Transcription factor, SBP-box
PfamPF031103.5E-31164237IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MESWSYLSGG KGFISEESVS VNDGMGRTKN GLMGWELKTP SSYVMCSSQE DSTNNQGFPE  60
LGSQNLMKKT MFSDQSIFGS VAASPSAAYS GENKSKSSSK LSSSVVESNS RDSSLIDLKL  120
GRFPDQIDAN VYKSPKIMPN VSGAESIVPA KRMRAGGVSS HPFCQVLGCG KDLSSCKDYH  180
KRHKVCEVHS KTAKVIVNGI EQRFCQQCSR FHLLAEFDDG KRSCRKRLAG HNERRRKPHT  240
GTRFRGTSFA TSSFACQDIL GGRFLHQPKF EMNDWYKNVK VEDGVERSHQ LAMPFSNGQL  300
QPKSVFTSYH AKKQCQPLHD EGQPAVTTSR INESAISSMH DMRGSDFVSP SLFHTSSTGS  360
EVLHVLDTSS TIHGLSGISN SSNALSLLSS QSRGSSNHST VFRAAHPLIS PSNNSRYSVT  420
QASKEVLGFS PQDSTGRMSN TFNSSGVNSA EGGLDQILFP SNTCSVDGIM QGPNFVNQKD  480
QLSCEDGPTI DLLQLSSQLQ RVEHQRLSMQ VKQGSNTFPG LRIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-29157237484squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0732910.0LC073291.1 Nicotiana tabacum NtabSPL6-3 mRNA for squamosa promoter binding protein NtabSPL6-3, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312856.10.0squamosa promoter-binding-like protein 6
RefseqXP_009758722.10.0PREDICTED: squamosa promoter-binding-like protein 6
RefseqXP_016495494.10.0PREDICTED: squamosa promoter-binding-like protein 6
TrEMBLA0A125SZN00.0A0A125SZN0_TOBAC; Squamosa promoter binding protein NtabSPL6-3
TrEMBLA0A1U7URK20.0A0A1U7URK2_NICSY; squamosa promoter-binding-like protein 6
STRINGXP_009758722.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51871639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.19e-46SBP family protein
Publications ? help Back to Top
  1. Han YY,Ma YQ,Li DZ,Yao JW,Xu ZQ
    Characterization and phylogenetic analysis of fifteen NtabSPL genes in Nicotiana tabacum L. cv. Qinyan95.
    Dev. Genes Evol., 2016. 226(1): p. 1-14
    [PMID:26635304]