PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016495337.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 298aa    MW: 32222.3 Da    PI: 6.605
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016495337.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.95.1e-314106198
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q 
  XP_016495337.1   4 SCNGCRVLRKGCSESCSIRPCLqwiktPESQSNATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWQLCQN 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelallk 98 
                     ++e++l +
  XP_016495337.1  99 AVEAVLKG 106
                     **998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.6813109IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-244102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSESCS IRPCLQWIKT PESQSNATVF LAKFYGRAGL MNLINAGPDH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWQLCQNAV EAVLKGAPVT PIASEVAVNN  120
NGPPLKLPYD IRHINKDDNA IKSNDLHRVR TRCRLKRSAT NTKATKANPV CSGSGDESAL  180
EKVNGSTSHD SSLSHQSEAA AVSAPNAQCE SREIESLQSA EMAEAEDSTA VEPASVSQVD  240
DRAEDGEIEL ELTLGFAPFA TSHGKPKDTK RSEAVHLLDA AGECKMELGL TFRCDQFC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016495337.10.0PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8862e-97LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A1S4C2G10.0A0A1S4C2G1_TOBAC; LOB domain-containing protein 41-like
STRINGXP_009801662.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-91LOB domain-containing protein 41