PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016495126.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 178aa    MW: 20115.8 Da    PI: 6.4953
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016495126.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.32.2e-4211109199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+l+r+C+++C +apyf +++pkkfanvhk+FGasnv+k+l+++pe++red+++slvyeAe+r+rdPvyG++g i +lq+++++l+++l 
  XP_016495126.1  11 SCAACKFLKRRCSPNCQFAPYFRSDEPKKFANVHKVFGASNVSKILNEVPEDQREDTVNSLVYEAEVRLRDPVYGCIGAIASLQRKMAELQHDLM 105
                     6********************************************************************************************99 PP

          DUF260  96 llke 99 
                     l+++
  XP_016495126.1 106 LART 109
                     9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.75610111IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-4111108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MKSHEPRSSS SCAACKFLKR RCSPNCQFAP YFRSDEPKKF ANVHKVFGAS NVSKILNEVP  60
EDQREDTVNS LVYEAEVRLR DPVYGCIGAI ASLQRKMAEL QHDLMLARTR LAYFATKQNP  120
TTNCSLMLDY DPFNVANMMP SDFVDVPITA GYLDSYAQNS FDMDHCASTN EFGQFPFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-4761186118LOB family transfactor Ramosa2.1
5ly0_B2e-4761186118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630762.11e-132PREDICTED: LOB domain-containing protein 21-like
RefseqXP_016495126.11e-132PREDICTED: LOB domain-containing protein 21-like
SwissprotQ9SRL82e-61LBD21_ARATH; LOB domain-containing protein 21
TrEMBLA0A1S4C1U51e-131A0A1S4C1U5_TOBAC; LOB domain-containing protein 21-like
STRINGXP_009630762.11e-132(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.16e-64LOB domain-containing protein 21
Publications ? help Back to Top
  1. Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB
    Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
    Plant Physiol., 2007. 144(1): p. 32-42
    [PMID:17351049]