PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016494844.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 185aa    MW: 20851.1 Da    PI: 6.16
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016494844.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.42e-1765140190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +f+++YA++vGF++ + + ++ k +g i++ ++ Cs+e  r+++ ++              C+a+l++++++++ w+vtk++++HnH+++
  XP_016494844.1  65 NFFDAYARRVGFTIHVGQYSRDKPDGPIISWDYSCSREVVRRKNIES--------------CNAMLRIERKNSDSWVVTKFVEDHNHSIV 140
                     69***************************************998877..............**************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-1465140IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MNIEVIDVEG QKRQKTGEIA AELIHNSKQG LPENFTERDA IVEVDDGEEK PYVGMEFQTE  60
EAAKNFFDAY ARRVGFTIHV GQYSRDKPDG PIISWDYSCS REVVRRKNIE SCNAMLRIER  120
KNSDSWVVTK FVEDHNHSIV NPSKVHYLQP RKHFSGASKT VGETPGAPTV IMVPVDGNHV  180
SVSSX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-164HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009761563.11e-129PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_009761564.11e-129PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_009761565.11e-129PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_009761566.11e-129PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_009761567.11e-129PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_009761568.11e-129PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_009761570.11e-129PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_009761571.11e-129PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_016494844.11e-136PREDICTED: protein FAR1-RELATED SEQUENCE 7-like, partial
TrEMBLA0A1S4C1C41e-135A0A1S4C1C4_TOBAC; protein FAR1-RELATED SEQUENCE 7-like
TrEMBLA0A1U7VI921e-127A0A1U7VI92_NICSY; protein FAR1-RELATED SEQUENCE 3-like
STRINGXP_009761563.11e-128(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-24FAR1 family protein