PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016494818.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 231aa    MW: 25067.5 Da    PI: 8.7169
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016494818.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.63.3e-41501491100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk+FGasnv+kll ++p  +r da++slvyeA++r+rdPvyG++g i++lqqql++l+ael+
  XP_016494818.1  50 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLLEVPVGQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQLQTLQAELN 144
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_016494818.1 145 AIRSE 149
                     99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.99149150IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-4150147IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MSRERERLDE IGKKLKTEID ASSQLHMQQQ MGRRQILGPA VGTTLNTITP CAACKLLRRR  60
CAEECPFSPY FSPHEPQKFA AVHKVFGASN VSKLLLEVPV GQRADAANSL VYEANVRLRD  120
PVYGCMGAIS TLQQQLQTLQ AELNAIRSEI LRYKYREAAN SLIASISTSV ADQLPQAPPT  180
PPPPPPPLPS VVVVSSSSST SSVSSLYTPP SSAGANFSAT IHNNSISYFD Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-46431574118LOB family transfactor Ramosa2.1
5ly0_B8e-46431574118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755185e-81HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800767.11e-169PREDICTED: LOB domain-containing protein 15-like isoform X2
RefseqXP_016494818.11e-169PREDICTED: LOB domain-containing protein 15-like isoform X2
SwissprotQ8L5T53e-76LBD15_ARATH; LOB domain-containing protein 15
TrEMBLA0A1S4C1651e-168A0A1S4C165_TOBAC; LOB domain-containing protein 15-like isoform X2
TrEMBLA0A1U7Y9G91e-168A0A1U7Y9G9_NICSY; LOB domain-containing protein 15-like isoform X2
STRINGXP_009589291.11e-167(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.11e-78LOB domain-containing protein 15
Publications ? help Back to Top
  1. Ohashi-Ito K,Iwamoto K,Fukuda H
    LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements.
    Plant Cell Physiol., 2018. 59(5): p. 989-996
    [PMID:29444288]