PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016493962.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 176aa    MW: 19446.2 Da    PI: 7.7521
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016493962.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601421.9e-4471061100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +Ca+Ck+lrr+C+kdC++apyfp ++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +la
  XP_016493962.1   7 PCASCKLLRRRCTKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVSSLVYEANARVRDPVYGCVGAISLLQNQVSQLQMQLA 101
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_016493962.1 102 VAQAE 106
                     *9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.6816107IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-447104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MGSGSSPCAS CKLLRRRCTK DCIFAPYFPP DDPHKFAIVH KVFGASNVSK MLQELPVQQR  60
GDAVSSLVYE ANARVRDPVY GCVGAISLLQ NQVSQLQMQL AVAQAEILCI QMQQEPVPSL  120
PTTCLMEPHV EKSSPFSTSN ATNYNFNNNL QSYLSFTSSS TSHVMQDPVK RESLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-4921087112LOB family transfactor Ramosa2.1
5ly0_B6e-4921087112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009629688.11e-130PREDICTED: LOB domain-containing protein 12-like
RefseqXP_016493962.11e-130PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW31e-77LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A1S4BYI21e-128A0A1S4BYI2_TOBAC; LOB domain-containing protein 12-like
STRINGXP_009629688.11e-129(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.19e-77LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]