PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016491803.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 378aa    MW: 40761.3 Da    PI: 5.9021
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016491803.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26036.21.7e-1113891085
          DUF260 10 rkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqq 85
                     +C+k+ Cv+   f   +  +f +++k++G++   ++l+++ p+e++ +a+++++ eA++r+rdPv Ga++ +  l+ 
  XP_016491803.1 13 MECKKEwCVFQ-FFSPFDIPDFLAIKKIYGTKAFGRMLSRVvPDERKAEAIRCITEEARCRIRDPVGGAFREMELLKM 89
                    38999978875.678888899******************9945666899**********************9988875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031951.0E-101488IPR004883Lateral organ boundaries, LOB
Gene3DG3DSA:3.40.50.7205.7E-80135377IPR016040NAD(P)-binding domain
SuperFamilySSF517356.13E-77137378IPR016040NAD(P)-binding domain
PRINTSPR000819.8E-42140157IPR002347Short-chain dehydrogenase/reductase SDR
CDDcd053339.29E-109140377No hitNo description
TIGRFAMsTIGR018303.4E-91141377IPR0112843-oxoacyl-(acyl-carrier-protein) reductase
PfamPF135614.5E-59146376No hitNo description
PRINTSPR000819.8E-42215226IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000801.6E-11215226IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000819.8E-42262278IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000801.6E-11268276IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000819.8E-42285304IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000801.6E-11285304IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000819.8E-42306323IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000819.8E-42339359IPR002347Short-chain dehydrogenase/reductase SDR
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006633Biological Processfatty acid biosynthetic process
GO:0055114Biological Processoxidation-reduction process
GO:0004316Molecular Function3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity
GO:0051287Molecular FunctionNAD binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MACPLHIFLG KEMECKKEWC VFQFFSPFDI PDFLAIKKIY GTKAFGRMLS RVVPDERKAE  60
AIRCITEEAR CRIRDPVGGA FREMELLKMA KPTSTHSSVN SYHQELILGA GFTERIGVRA  120
PVETTEQAGV DAAAKVEGPV VIVTEASRGI GKAIALALGK AGCKVLVNYA ISSKDAEEVS  180
KEIEACGGEA FTFVGNVSKQ EDVESMIKTV VGRWGTVDIL INNAGVTRDT LLMRMNQSQW  240
QEVIEFSLTG VFLCTQAAAK IMMKKKKGRI INISPVVGLV GNAGQDTAKA GVIGLTKSVA  300
KEYASWNITV NVVAPGFIAS DMSAKLSEDI EEEISQSVPL GRCGQPEEVA GLVEFLALNP  360
AASYITGQVL NIDGGMVM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1edo_A1e-1211393782244BETA-KETO ACYL CARRIER PROTEIN REDUCTASE
2cdh_G1e-1211393782244KETOACYL REDUCTASE
2cdh_H1e-1211393782244KETOACYL REDUCTASE
2cdh_I1e-1211393782244KETOACYL REDUCTASE
2cdh_J1e-1211393782244KETOACYL REDUCTASE
2cdh_K1e-1211393782244KETOACYL REDUCTASE
2cdh_L1e-1211393782244KETOACYL REDUCTASE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0142050.0BT014205.1 Lycopersicon esculentum clone 133382F, mRNA sequence.
GenBankEU6165610.0EU616561.1 Capsicum annuum putative 3-oxoacyl-(acyl-carrier protein) reductase mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016491803.10.0PREDICTED: 3-oxoacyl-[acyl-carrier-protein] reductase 4-like
SwissprotP286431e-128FABG_CUPLA; 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic
TrEMBLA0A1S4BSN20.0A0A1S4BSN2_TOBAC; 3-oxoacyl-[acyl-carrier-protein] reductase 4-like
STRINGXP_009616064.11e-152(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26620.13e-11LOB domain-containing protein 23
Publications ? help Back to Top
  1. Klein B,Pawlowski K,Höricke-Grandpierre C,Schell J,Töpfer R
    Isolation and characterization of a cDNA from Cuphea lanceolata encoding a beta-ketoacyl-ACP reductase.
    Mol. Gen. Genet., 1992. 233(1-2): p. 122-8
    [PMID:1376402]