PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016490582.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 89aa    MW: 10343.8 Da    PI: 9.9038
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016490582.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding331.4e-10348346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WTt   +++ +a +++ ++   +W+ Iar++g g+++++++ ++  
   XP_016490582.1  3 SWTTRQNKKFEEALALFDKEtpdRWHNIARCVG-GKSAEEVRRHYEL 48
                     6*****************99*************.***********76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.3E-7152IPR001005SANT/Myb domain
PROSITE profilePS5129310.78154IPR017884SANT domain
Gene3DG3DSA:1.10.10.602.6E-4356IPR009057Homeodomain-like
CDDcd001671.29E-7350No hitNo description
PfamPF002491.3E-7348IPR001005SANT/Myb domain
SuperFamilySSF466891.09E-12358IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MASWTTRQNK KFEEALALFD KETPDRWHNI ARCVGGKSAE EVRRHYELLL KDIMQIENGQ  60
VPLPNYKAVG SNSRGYANEQ RLLKNLKLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-294891193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771192.19e-62PREDICTED: protein RADIALIS-like 3
RefseqXP_016490582.19e-62PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1731e-35RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1S4BNX82e-60A0A1S4BNX8_TOBAC; protein RADIALIS-like 3
TrEMBLA0A1U7VTH52e-60A0A1U7VTH5_NICSY; protein RADIALIS-like 3
STRINGXP_009771192.14e-61(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.25e-38RAD-like 6