PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016488455.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 167aa    MW: 19003 Da    PI: 9.5744
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016488455.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.72.3e-4046123178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cq+++C+++ls+ak+yh+rhkvCe h+k+++v+v+gl+qrfCqqCsrfhe+ efDe+krsCrrrLa+hnerrrk+++
  XP_016488455.1  46 CCQADKCTVNLSDAKQYHKRHKVCEYHAKSQAVVVAGLRQRFCQQCSRFHEVGEFDESKRSCRRRLAGHNERRRKTST 123
                     6**************************************************************************875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-3140108IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.22344121IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.5E-3745124IPR004333Transcription factor, SBP-box
PfamPF031104.8E-3147120IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MEDNNDLFIL ATDNDDKKKR NPSYNNRSST NNNNEKIKGS STSMRCCQAD KCTVNLSDAK  60
QYHKRHKVCE YHAKSQAVVV AGLRQRFCQQ CSRFHEVGEF DESKRSCRRR LAGHNERRRK  120
TSTTSSSSDQ CNAEVSSSRK SIIGSDTHQI INFQENAAAG YKQFQIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-3741120584squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16914499}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156. {ECO:0000269|PubMed:16914499}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2606352e-64KP260635.1 Nicotiana tabacum SBP-box 4 (SPL4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009765576.11e-121PREDICTED: squamosa promoter-binding-like protein 3
RefseqXP_016488455.11e-121PREDICTED: squamosa promoter-binding-like protein 3
SwissprotQ9S7584e-42SPL5_ARATH; Squamosa promoter-binding-like protein 5
TrEMBLA0A1S4BHV21e-120A0A1S4BHV2_TOBAC; squamosa promoter-binding-like protein 3
TrEMBLA0A1U7VKT91e-120A0A1U7VKT9_NICSY; squamosa promoter-binding-like protein 3
STRINGXP_009765576.11e-120(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74924105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.12e-43squamosa promoter binding protein-like 5
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]
  3. Ioannidi E, et al.
    Trichome patterning control involves TTG1 interaction with SPL transcription factors.
    Plant Mol. Biol., 2016. 92(6): p. 675-687
    [PMID:27631431]
  4. Jung JH,Lee HJ,Ryu JY,Park CM
    SPL3/4/5 Integrate Developmental Aging and Photoperiodic Signals into the FT-FD Module in Arabidopsis Flowering.
    Mol Plant, 2016. 9(12): p. 1647-1659
    [PMID:27815142]