PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016488257.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 203aa    MW: 22392.2 Da    PI: 4.5651
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016488257.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601216.6e-3881081100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrr+C+++C++apyf+ eq +++fa+vhk+FGasnv+kll +lp + r++a+ ++ yeA ar++dP+yG+vg+i++l+qq+++l +e+
  XP_016488257.1   8 SCGACKFLRRRCSNECIFAPYFCYEQaTNHFAAVHKVFGASNVSKLLLHLPLHCRSEAAVTMSYEALARMQDPIYGCVGHIFALEQQVASLVEEI 102
                     6***********************9978******************************************************************9 PP

          DUF260  95 allkee 100
                     + + ++
  XP_016488257.1 103 EITANQ 108
                     998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.4897109IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-358105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MAGPAGSSCG ACKFLRRRCS NECIFAPYFC YEQATNHFAA VHKVFGASNV SKLLLHLPLH  60
CRSEAAVTMS YEALARMQDP IYGCVGHIFA LEQQVASLVE EIEITANQMA FYAGEVPMEN  120
TINTLQFSLE CNNMNVGNNH VNHSITSLAH VNDTSANEAF ITQMNAELPE INGFDNLFSS  180
TFFDFDISDR VFDGLDLICT TNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-3451168119LOB family transfactor Ramosa2.1
5ly0_B3e-3451168119LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757428.11e-150PREDICTED: LOB domain-containing protein 33-like
RefseqXP_016488257.11e-150PREDICTED: LOB domain-containing protein 33-like
SwissprotQ9LHS85e-53LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A1S4BHD41e-149A0A1S4BHD4_TOBAC; LOB domain-containing protein 33-like
TrEMBLA0A1U7UT891e-149A0A1U7UT89_NICSY; LOB domain-containing protein 33-like
STRINGXP_009757428.11e-150(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127691521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.12e-55LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]