PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016486878.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 26482.8 Da    PI: 4.9776
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016486878.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.63.7e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n + rqvtfskRr g++KKAeELSvLCda+va+iifsstgkl+eyss
  XP_016486878.1  9 KKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEYSS 59
                    68***********************************************96 PP

2K-box53.79.1e-199117318100
           K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     + ++++L kei++  + +R++ Ge+L+ Ls++eLqqLe+ Le +l+++ ++K + ++++i++lq+k  +l een++L+++++e
  XP_016486878.1  91 NSNYSRLSKEISEKSHRLRQMRGEELQGLSIEELQQLERSLEAGLTRVIERKGDKIMSEINQLQQKGMQLMEENERLKQQVME 173
                     46799***************************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.628161IPR002100Transcription factor, MADS-box
CDDcd002652.39E-40268No hitNo description
SuperFamilySSF554551.14E-31383IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.87487177IPR002487Transcription factor, K-box
PfamPF014865.9E-1792171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0030154Biological Processcell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MAREKIQIKK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEYSSS  60
SMKEILERCD LHSKNLEKLD HPSLELQLVE NSNYSRLSKE ISEKSHRLRQ MRGEELQGLS  120
IEELQQLERS LEAGLTRVIE RKGDKIMSEI NQLQQKGMQL MEENERLKQQ VMEISNNGYN  180
NPAAVLVAVE SENGYINEEG QSSESVTNAC NSTGPPPQDD DSSDTSLKLG LPYSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_D1e-19266165MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C1e-19266165MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B1e-19266165MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_A1e-19266165MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
3p57_J1e-19266165Myocyte-specific enhancer factor 2A
3p57_I1e-19266165Myocyte-specific enhancer factor 2A
3p57_D1e-19266165Myocyte-specific enhancer factor 2A
3p57_C1e-19266165Myocyte-specific enhancer factor 2A
3p57_B1e-19266165Myocyte-specific enhancer factor 2A
3p57_A1e-19266165Myocyte-specific enhancer factor 2A
3kov_J1e-19266165Myocyte-specific enhancer factor 2A
3kov_I1e-19266165Myocyte-specific enhancer factor 2A
3kov_B1e-19266165Myocyte-specific enhancer factor 2A
3kov_A1e-19266165Myocyte-specific enhancer factor 2A
1tqe_S1e-19166166Myocyte-specific enhancer factor 2B
1tqe_R1e-19166166Myocyte-specific enhancer factor 2B
1tqe_Q1e-19166166Myocyte-specific enhancer factor 2B
1tqe_P1e-19166166Myocyte-specific enhancer factor 2B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1299070.0GU129907.1 Petunia x hybrida MADS-box protein 20 (PMADS20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016486878.11e-171PREDICTED: MADS-box protein JOINTLESS-like
SwissprotQ9FUY61e-136JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLD1MBJ91e-153D1MBJ9_PETHY; EXTRAPETALS
STRINGPGSC0003DMT4000417731e-145(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9382377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-114MIKC_MADS family protein