PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016485071.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 227aa    MW: 24821.2 Da    PI: 8.1909
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016485071.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.11.1e-41451441100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++C+++pyf  ++p+kfa vhk+FGasnv+k+l ++pe++r d+++slvyeA++r+rdPvyG++g i++lqqq++ l+ el+
  XP_016485071.1  45 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPENQRADTANSLVYEANVRLRDPVYGCMGAISALQQQVQALQMELN 139
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_016485071.1 140 VVRAE 144
                     99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.36944145IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-4145142IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MSRERERYEE IGKKIKREAD DYSQMGKRYL LGNPGTTTTL NTVTPCAACK LLRRRCAQEC  60
PFSPYFSPHE PQKFASVHKV FGASNVSKML MEVPENQRAD TANSLVYEAN VRLRDPVYGC  120
MGAISALQQQ VQALQMELNV VRAEILKYKF GDTTTLTNIP SSHISSLLAS GAVSVVAALP  180
PPPPPPPPPP LSLPSTISSS SDAMYAQPST TTEFSTISSE NNISYFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-46381624125LOB family transfactor Ramosa2.1
5ly0_B1e-46381624125LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-97HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755181e-97HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009777195.11e-168PREDICTED: LOB domain-containing protein 15
RefseqXP_016485071.11e-168PREDICTED: LOB domain-containing protein 15-like
SwissprotQ8L5T54e-84LBD15_ARATH; LOB domain-containing protein 15
TrEMBLA0A1S4B8601e-167A0A1S4B860_TOBAC; LOB domain-containing protein 15-like
TrEMBLA0A1U7WSI01e-167A0A1U7WSI0_NICSY; LOB domain-containing protein 15
STRINGXP_009777195.11e-168(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.13e-72LOB domain-containing protein 15
Publications ? help Back to Top
  1. Ohashi-Ito K,Iwamoto K,Fukuda H
    LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements.
    Plant Cell Physiol., 2018. 59(5): p. 989-996
    [PMID:29444288]