PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016483102.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 313aa    MW: 35360.2 Da    PI: 4.8488
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016483102.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.61.1e-27130188259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D+++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ve+s ++  ++++tY+ eH h+
  XP_016483102.1 130 SDKWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVEQSCTEIGTFIVTYTAEHSHS 188
                     79*************************998****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-29115190IPR003657WRKY domain
PROSITE profilePS5081131.353124190IPR003657WRKY domain
SuperFamilySSF1182901.31E-24126190IPR003657WRKY domain
SMARTSM007741.3E-31129189IPR003657WRKY domain
PfamPF031064.9E-23131187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MMDWGLQAVV IGSSTCNDIQ YGANYIDQKS YFSPLDFQES EYLAFSDMKT EGLSDELEEL  60
YKPFYPVVGQ NTLMASSVSF PKEPKEEQKG ENEQQSFALV AAPAYVPKYK RRKNEQKRVV  120
FQLKAEDLSS DKWAWRKYGQ KPIKGSPYPR SYYRCSSSKG CLARKQVEQS CTEIGTFIVT  180
YTAEHSHSQP TRRNSLAGTI KTKFPTSNNS NKNGSPKMEK EKISSTHGST SDLVLSKATL  240
LNIESNIHES QFPEKEFPEI EINQENNMFE GSDENECVSI EDMFDGDFFA GLEDIHDGFS  300
SSFGCNSTFP FSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-171271901274WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00448DAPTransfer from AT4G23550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764282.10.0PREDICTED: probable WRKY transcription factor 29
RefseqXP_016483102.10.0PREDICTED: probable WRKY transcription factor 29
SwissprotQ9SUS13e-52WRK29_ARATH; Probable WRKY transcription factor 29
TrEMBLM1AWU61e-134M1AWU6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000320911e-133(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57812335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.18e-41WRKY family protein