PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016483030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 189aa    MW: 20759.8 Da    PI: 5.2358
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016483030.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.21.2e-4233131199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++l+e++r da++s+vyeA+ar+rdPvyG++g i +lq+q+++l+aela
  XP_016483030.1  33 PCAACKILRRRCVDKCVLAPYFPPTEPLKFTIAHRVFGASNIIKMLQELREDQRADAVNSMVYEANARIRDPVYGCAGAICQLQKQISELQAELA 127
                     7********************************************************************************************** PP

          DUF260  96 llke 99 
                     +++ 
  XP_016483030.1 128 KAQV 131
                     9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.0232133IPR004883Lateral organ boundaries, LOB
PfamPF031958.2E-4333130IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MECSDKITAT SSSSSAGMMT PPPSPPSPVI LTPCAACKIL RRRCVDKCVL APYFPPTEPL  60
KFTIAHRVFG ASNIIKMLQE LREDQRADAV NSMVYEANAR IRDPVYGCAG AICQLQKQIS  120
ELQAELAKAQ VEMLNVQSQN ANLVSLICRE MSQNQGNNGS VCPDQQTYGN TNLFLDDNSV  180
YAAWEPLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-43241352113LOB family transfactor Ramosa2.1
5ly0_B4e-43241352113LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780362.11e-140PREDICTED: LOB domain-containing protein 1-like
RefseqXP_016483030.11e-140PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR02e-71LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A1S4B2661e-138A0A1S4B266_TOBAC; LOB domain-containing protein 1-like
TrEMBLA0A1U7WK691e-138A0A1U7WK69_NICSY; LOB domain-containing protein 1-like
STRINGXP_009780362.11e-139(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-73LOB domain-containing protein 1