PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016482088.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 223aa    MW: 24456.6 Da    PI: 7.3442
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016482088.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.23.4e-302103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C++lr++C+++C+l++ +     p++q++++ +v+k+FG++ ++++l+++pe++r+++++sl++e++ r+ +Pv+Gavg++++++++++q+
  XP_016482088.1   2 SCNGCRILRKGCNENCILRQSLqsiesPHAQANATVFVAKFFGRAGLMSFLSSVPESQRPALFQSLLFESCGRTVNPVHGAVGLLWTGNWHVCQS 96 
                     6*********************9999999****************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l 
  XP_016482088.1  97 AVETVLK 103
                     *998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.7871107IPR004883Lateral organ boundaries, LOB
PfamPF031957.4E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MSCNGCRILR KGCNENCILR QSLQSIESPH AQANATVFVA KFFGRAGLMS FLSSVPESQR  60
PALFQSLLFE SCGRTVNPVH GAVGLLWTGN WHVCQSAVET VLKGGVLRPL PEFSGATALP  120
ESDSASEAND VDLFRSQSFN FRSKRKVMDE VAEDLDLGLS SGFPAKMTAT GSRMNRRTEK  180
RREATPSLNS DESDTTTLES GFMCHQNPQQ GQGDDTKLLR LFF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016482088.11e-165PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9FN112e-71LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A1S4AZX61e-164A0A1S4AZX6_TOBAC; LOB domain-containing protein 37-like
STRINGXP_009795798.11e-162(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-73LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]