PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016481012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 223aa    MW: 24929.7 Da    PI: 6.9654
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016481012.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.87.6e-15103153255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y GV +++ +g + Ae rdp  +g  +r +lg++ tae+Aa a+++a+ k++g
  XP_016481012.1 103 RYIGVKRRP-WGTFSAEMRDPDRRG--ARLWLGTYETAEDAALAYDQAAFKIRG 153
                     699***9*9.**********95454..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-10103153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-28103162IPR001471AP2/ERF domain
SMARTSM003803.4E-30103167IPR001471AP2/ERF domain
CDDcd000181.02E-26103163No hitNo description
PROSITE profilePS5103222.26103161IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-20103162IPR016177DNA-binding domain
PRINTSPR003678.3E-8104115IPR001471AP2/ERF domain
PRINTSPR003678.3E-8127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MNSADVTFSF SDFNLLESIK QHLLNDSDFS ETLSPMSSSN GLPNSPSSGF GSSLSAENSF  60
EISLSDQNFE ETIPNLEEKS ESEEEMKGNV VARENNAPED WRRYIGVKRR PWGTFSAEMR  120
DPDRRGARLW LGTYETAEDA ALAYDQAAFK IRGSRARLNF PHLIGSNMPK PARVTARRSR  180
TRSPEPLSSS STSSSVNVPR KRKIDVINSI AKVCHGWNLH MLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-26102167469ATERF1
3gcc_A5e-26102167469ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8591570.0GQ859157.1 Nicotiana benthamiana ERF1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781921.11e-163PREDICTED: ethylene-responsive transcription factor 2-like
RefseqXP_016481012.11e-163PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotQ404793e-37ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLA0A1S4AWL11e-162A0A1S4AWL1_TOBAC; ethylene-responsive transcription factor 2-like
TrEMBLA0A1U7WX891e-162A0A1U7WX89_NICSY; ethylene-responsive transcription factor 2-like
STRINGXP_009781921.11e-162(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-23ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]