PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016480560.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 212aa    MW: 23208.3 Da    PI: 6.4769
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016480560.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.61.9e-42451441100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++Cvlapyfp ++p kf  +h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la
  XP_016480560.1  45 PCAACKILRRRCAEKCVLAPYFPPNNPIKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARLRDPVYGCAGAICQLQKQVNELQAQLA 139
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_016480560.1 140 KAQAE 144
                     99976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.05844145IPR004883Lateral organ boundaries, LOB
PfamPF031959.6E-4345142IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEYSSDTKAT VISTSPSSSR SVSPPSSSSS SPNSPPPPPM VVVSPCAACK ILRRRCAEKC  60
VLAPYFPPNN PIKFTTAHRV FGASNIIKFL QELPESQRAD AVSSMVYEAN ARLRDPVYGC  120
AGAICQLQKQ VNELQAQLAK AQAEVVNMQC QQANLMALIC MDMDQSSPQA SPQQQSNLES  180
FTNNIPHSFQ NNMSFLDDNN NFGSVWEPLM WT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-434415210118LOB family transfactor Ramosa2.1
5ly0_B5e-434415210118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754453e-54HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755183e-54HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009763968.11e-155PREDICTED: LOB domain-containing protein 1-like
RefseqXP_016480560.11e-155PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR04e-74LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A1S4AVF61e-154A0A1S4AVF6_TOBAC; LOB domain-containing protein 1-like
TrEMBLA0A1U7VC881e-154A0A1U7VC88_NICSY; LOB domain-containing protein 1-like
STRINGXP_009763968.11e-154(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.16e-62LOB domain-containing protein 1