PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016479372.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 98aa    MW: 11460.7 Da    PI: 7.7559
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016479372.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-08652347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      WT +  +l+ +a + +  +   +W+  a+ +g g++++++k ++ k+
   XP_016479372.1  6 TWTNQQNKLFENALAIYDREtpdRWRNLAKAVG-GKSEEEVKRHYEKL 52
                     7*****************88*************.***********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.661257IPR017884SANT domain
SMARTSM007172.1E-7355IPR001005SANT/Myb domain
SuperFamilySSF466893.67E-12561IPR009057Homeodomain-like
CDDcd001674.52E-6653No hitNo description
PfamPF002492.2E-6652IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-5659IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MASNSTWTNQ QNKLFENALA IYDRETPDRW RNLAKAVGGK SEEEVKRHYE KLVEDIKHIE  60
SGNVALPNYN NANNGGHNNY KGYNFMDEEQ RLKYLKLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-29298693RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009588768.11e-67PREDICTED: protein RADIALIS-like 3
RefseqXP_016479372.11e-67PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1731e-29RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1S4ARJ83e-66A0A1S4ARJ8_TOBAC; protein RADIALIS-like 3
STRINGXP_009588768.16e-67(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.14e-30RAD-like 6