PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016479329.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 223aa    MW: 25914.1 Da    PI: 8.8645
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016479329.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260110.71e-349104195
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     aCa+Ck++r+kC+++Cvlapyfpae++++f++vhk+FG+sn++k++k+l+e++ r++a++sl++eA +r++dPv G +g ++++ ++l+  k++ 
  XP_016479329.1   9 ACASCKHQRKKCTEKCVLAPYFPAEKNREFKAVHKVFGVSNITKIVKNLKEDHdRRKAVESLIWEAFCRQKDPVFGPYGEYKRIYEELKLYKSQY 103
                     7************************************************66555**********************************9999887 PP

          DUF260  95 a 95 
                     +
  XP_016479329.1 104 E 104
                     6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.2068110IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-339105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MQKTSGTAAC ASCKHQRKKC TEKCVLAPYF PAEKNREFKA VHKVFGVSNI TKIVKNLKED  60
HDRRKAVESL IWEAFCRQKD PVFGPYGEYK RIYEELKLYK SQYEQILQMP ISQGSNNNGM  120
AYETTAQGLV NGWNINKRNE NNLLYINENS TVESWSSYNN KNNPLHHHVQ NIEKLRTENN  180
NGSIVIVPQP QAYNEFNQQY FLAGQYNPID SKSRESMLWE DHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-22487588LOB family transfactor Ramosa2.1
5ly0_B7e-22487588LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016479329.11e-168PREDICTED: LOB domain-containing protein 2-like
TrEMBLA0A1S4ARL91e-166A0A1S4ARL9_TOBAC; LOB domain-containing protein 2-like
STRINGXP_009619412.11e-165(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101771827
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.12e-43LOB domain-containing protein 2