PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016477939.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 248aa    MW: 26876.6 Da    PI: 7.8858
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016477939.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.81.9e-294107199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C + p++     p++q++++ +++k++G++ +l+l+++ p++ r++++ssl+yeA+ r+ +P+yG++g+++++++ql+q+
  XP_016477939.1   4 SCNGCRVLRKGCNEKCSIKPCLqwiksPEAQSNATLFLAKFYGRAGLLNLINSGPDHLRPAIFSSLLYEACGRIVNPIYGSAGLLTSGNWQLCQA 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelallke 99 
                     +++++l ++
  XP_016477939.1  99 AVDAVLSGA 107
                     *99987765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.3323109IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-234102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MRLSCNGCRV LRKGCNEKCS IKPCLQWIKS PEAQSNATLF LAKFYGRAGL LNLINSGPDH  60
LRPAIFSSLL YEACGRIVNP IYGSAGLLTS GNWQLCQAAV DAVLSGASIE KLSPDSAANT  120
VCPSLKVCDI RHVSKENDLT PDLHKVKVRT KFKRVSAKPQ QRNQSPEVDY AARVMWSWSH  180
KEEEVIGSPS RDSGLSQQRE GESGDADSGS VETVEASLAK LDESDVGLEL TLGLQPLMKS  240
PECGATRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016477939.10.0PREDICTED: LOB domain-containing protein 40-like
SwissprotQ9M8862e-76LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A1S4AMS30.0A0A1S4AMS3_TOBAC; LOB domain-containing protein 40-like
STRINGXP_009630484.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.16e-79LOB domain-containing protein 41