PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016477504.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 188aa    MW: 20442.1 Da    PI: 6.4845
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016477504.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260668.9e-21295198
          DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92
                    +C++C+vlrr+C+++C+l+ ++     p +q++++ +v k+FG+s ++ +++a+pe++r+         A+ r+ +Pv Gavg++++++++++q+++
  XP_016477504.1  2 SCNGCRVLRRRCSDNCTLRACLdgiddPRAQANATLFVSKFFGRSDLMAFIAAVPENRRP---------ACGRTVNPVTGAVGLLSTGNWHVCQKAV 89
                    6*********************************************************98.........89************************** PP

          DUF260 93 elallk 98
                    e++l++
  XP_016477504.1 90 ETVLVG 95
                    998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.288198IPR004883Lateral organ boundaries, LOB
PfamPF031954.7E-17292IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MSCNGCRVLR RRCSDNCTLR ACLDGIDDPR AQANATLFVS KFFGRSDLMA FIAAVPENRR  60
PACGRTVNPV TGAVGLLSTG NWHVCQKAVE TVLVGGNLRP VFAGILTPYM NETFESFRCG  120
GAWDIPNQFS NKSGSFTDGS DHIDTTEWVG LEKRWNTTSS IGSETELSDV SLGLDSGNKE  180
PKLLNLFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606112.11e-137PREDICTED: LOB domain-containing protein 38-like isoform X2
RefseqXP_016477504.11e-137PREDICTED: LOB domain-containing protein 38-like isoform X2
SwissprotQ9SN231e-44LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A1S4ALI41e-136A0A1S4ALI4_TOBAC; LOB domain-containing protein 38-like isoform X2
STRINGXP_009606111.11e-134(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.14e-47LOB domain-containing protein 38